I am new with Bioinformatics and I am currently working on quantifying my genes in the RNA data that I received.
My workflow...
23 results in 0.0035 seconds.
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Using featureCounts on HISTA2 aligned data of the tomato genome
Hello there.
I am new with Bioinformatics and I am currently working on quantifying my genes in the RNA data that I received.
My workflow...Last edited by Antzel; 08-08-2024, 02:42 AM. -
Help with ERV analysis
Hi,
Very new to this! Apologies if not enough information given.
I'm trying to count the change in ERV expression before and after treatment...Last edited by icd20; 02-08-2021, 07:53 AM. -
featureCounts output format error
Hi
I am trying to use the latest version of featureCounts (Subread package version 2.0.0) with the following command (based on Chothani,... -
featureCounts output to DESeq2?
I am doing an RNA-seq analysis where I have used featureCounts to count the number of reads per gene feature. The output looks like this:
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featureCounts - does it normalize by gene length?
Hello,
I'm starting to analyze RNA seq data, and I was hoping you can please help me clear something up
I am using FASTQ groomer,... -
quantifying transcripts in a redundant genome
Hi,
I am trying to quantify the number of reads mapping to genes in a highly redundant bacterial genome (i.e., often several exact gene... -
featureCounts does not recognize BWA XA tag?
Hello,
I am using featureCounts option -M. In the user guide, it says if it is specified, multi-mapping reads will be counted. The program... -
FeatureCounts Normalization
Hi,
I've been using FeatureCounts on differentially accessible regions between multiple atac-seq samples to get the reads per region in... -
featureCounts : limits on multioverlap (option -O)
Hello everybody,
I'm running featureCounts (version 1.6.0) with an annotation in SAF format, this way :
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How to get read-counts for sam files with transcriptome reference??
Hi,
I am working on rna-seq data analysis..
Mapped the reads to transcriptome reference (cDNA fasta file) for wheat using Bowtie2.... -
Can or should we perform feature counting with `bedtools intersect -c`?
I have the following BAM file and a annotation file.
What I want to do is to calculate reads count in
I can do it with the following three... -
Difficulty using .gtf file in featureCounts read summarization
Hello,
I am doing differential expression analysis on an insect bacterial endosymbiont. I have Illumina HiSeq reads that are paired-end... -
Large number of Unassigned_NoFeature reads from featureCounts
I have a bit of a mystery on my hands about an RNA-Seq Project.
I am working with some mice lines, standard RNA-seq prep, paired end. ... -
featureCount overlapping features from different strands
Hi all,
My name is Haritz Irizar and I am a postdoctoral fellow at the Icahn School of Medicine at Mount Sinai.
I'm intending... -
featureCounts error
I am running into a featureCounts error that has been referred to in prior reports (https://www.biostars.org/p/213666/ and http://seqanswers.com/foru...Last edited by GenoMax; 03-19-2017, 05:11 PM.
