Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • featureCounts output to DESeq2?

    I am doing an RNA-seq analysis where I have used featureCounts to count the number of reads per gene feature. The output looks like this:

    Geneid Chr Start End Strand Length sample.sorted.bam
    gene:CDR20291_3551 Chromosome 9450 9857 + 408 5
    gene:CDR20291_3552 Chromosome 9857 10630 + 774 53
    gene:EBG00000018530 Chromosome 10716 12345 + 1630 4

    Will DESeq2 understand this table? If not, how do I trim this to contain only the gene id from the first column and the counts from the last column?

    Thanks in advance!

Latest Articles

Collapse

  • seqadmin
    Advanced Methods for the Detection of Infectious Disease
    by seqadmin




    The recent pandemic caused worldwide health, economic, and social disruptions with its reverberations still felt today. A key takeaway from this event is the need for accurate and accessible tools for detecting and tracking infectious diseases. Timely identification is essential for early intervention, managing outbreaks, and preventing their spread. This article reviews several valuable tools employed in the detection and surveillance of infectious diseases.
    ...
    11-27-2023, 01:15 PM
  • seqadmin
    Strategies for Investigating the Microbiome
    by seqadmin




    Microbiome research has led to the discovery of important connections to human and environmental health. Sequencing has become a core investigational tool in microbiome research, a subject that we covered during a recent webinar. Our expert speakers shared a number of advancements including improved experimental workflows, research involving transmission dynamics, and invaluable analysis resources. This article recaps their informative presentations, offering insights...
    11-09-2023, 07:02 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 12-01-2023, 09:55 AM
0 responses
21 views
0 likes
Last Post seqadmin  
Started by seqadmin, 11-30-2023, 10:48 AM
0 responses
20 views
0 likes
Last Post seqadmin  
Started by seqadmin, 11-29-2023, 08:26 AM
0 responses
15 views
0 likes
Last Post seqadmin  
Started by seqadmin, 11-29-2023, 08:12 AM
0 responses
17 views
0 likes
Last Post seqadmin  
Working...
X