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oriol started a topic Error in flags after picard FixMateInformation?

in Bioinformatics

02-07-2013, 03:33 AM
Error in flags after picard FixMateInformation?

Hi!

I am not sure, but it seems that after using Picard's FixMateInformation, some flags of the BAM file are wrong.

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yjx1217 started a topic What's the merit of running FixMateInformation

in Bioinformatics

01-10-2012, 11:03 AM
What's the merit of running FixMateInformation

Hi there,

I saw a few NGS data processing piplelines have a "fix mate information" step by either running picard tools or samtools...

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