Hello all,
Sorry if this has been posted before, but after searching the internet I seem to be at a dead end.
I currently...
23 results in 0.0056 seconds.
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Download all bacteria genomes in .gbk format
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sam format: SEQ field
Hi
I have a question regarding SAM format. What does it represent the field $10 (SEQ)? Checking SAM format manual (https://samtools.g... -
How to read an Affymetrix Axiom genotype (array data) file?
Hi,
I'm trying to put together genotype data for wheat samples from this resource:
http://www.cerealsdb.uk.net/cerealgenomics/C... -
How can I validate fastq files?
I want to check my fastq files to make sure that:
- The two files of a paired reads run have the same size and number of sequences.
- That each
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Change of extension .results
Hello everybody:
Have a nice day! I should be very grateful if you would help me to know requirements to change file format .results to... -
Help with formating fasta headers
Hi all,
I'm fairly new at all of this - trained as a benchtop scientist and learning the bioinformatics on the fly, so sorry if this is... -
Pipelining "Samtools view" : invalid header in output .bam files
Hi,
I'm trying to filter properly paired and mapped reads from a BWA alignment using this command:
...Code:samtools view -hu -F4 bam_sorte
Last edited by fabfab; 04-02-2014, 12:25 AM. -
What file format is this? [ChIP-seq]
I have been given this file. I know it is genomic co-ordinates for mapped ChIP-seq reads. Is this a standard format?
Example:
... -
whether should keep same number of mate reads as input into Tophat
Hello all,
I use fastx-toolkit to fliter low quality reads from paired-end reads files respectively, which will lead to the different amount... -
Convert pileup to bed
Hello,
I'm currently using samtools mpileup like this:
...Code:samtools mpileup -l target_regions.bed file1.bam file2.bam file3.bam
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problem on file format in ChIP-Seq data analysis
Hi all,
I am wondering a problem about the file format in ChIP-Seq data analysis.
While I only have aligned data in BED format, what should... -
Using "Eland" format in Bowtie
Hello, I am new to Bowtie, so please pardon my naivety.
I have a reads file in the following format, which I suppose is the Eland format...Last edited by medalofhonour; 07-19-2011, 09:26 AM. -
alignment conversion
Hi,
Does anyone knows how to convert VectorNTI AlignX .apr file to CustalW .aln format?
Tnx, -
Tools for converting JGI annotation data to NCBI .asn
Hi all,
We're looking for a tool that would convert the data formats output from the JGI's Integrated Microbial Genomes web portal to the *.asn... -
Input files for Roche GSMapper
I am using GSMapper to assemble 454 reads to a reference bovine genome.
I would like to specify a reference genome annotation and so that my variations...
