Hi everyone!
I'm trying to find protein orthologs between strains using InParanoid.
But when I execute it, I obtain errors in <formatdb>...
9 results in 0.0028 seconds.
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InParanoid blastall and formatb ERROR
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Help with custom database of a genera and count of hits (NGS, 454)
Hello biologists and bioinformaticians around the world!
I'm having serious problems to accomplish a task.
I need to perform... -
dna, dna_sm and dna_rm which one should I use to form a blast database?
I saw there are a couple of files on the ensembl ftp website:
ftp://ftp.ensembl.org/pub/release-76...lanoleuca/dna/... -
How can I format RDP database to be used in a BLAST search?
Hello there and thank you for your welcome!
I have to format RDP 16S bacterial database in fasta format (downladed from here:http://rd... -
formatdb works but makeblastdb doesn't (BLAST)
Dear all,
i am trying to format the non-redundant fasta database (nr) downloaded from the NCBI repository. I have initially formatted it... -
format uniref90.xml to database for BLAST
we want to get a formated database for BLAST from Uniref90.
we referred an article which used an early release Uniref90, say version 10.0
... -
Make Multi-fasta with annotations
Hi everyone
Im ending my work and i have a problem, how can i make that my multi-fasta file with the query sequence has a descriptions... -
Make my own blast DB
Hi everyone
I have a question about how to make my own BLASTdb using the result of my Ref-seq work before the annotation step, i mean not... -
Blast problem
Hi everybody, I am a bit desperate and hope someone can help me. I need to create a subset of the nr-database (for blastx) using a negative or positive...
