Hi,
From what I understand, for smart-seq2 sequencing files there are multiple fastq files per sample with one single/pair per cell. However,...
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Downloading smart-seq2 fastq files from NCBI GEO
Last edited by malonzm1; 05-08-2023, 07:42 PM. -
Quick way to QC processed RNA-Seq data
Greetings,
Is there some software/library that will automatically perform a data consistency check and possibly heatmaps on processed RNA-Seq... -
RankProduct - Is this a valid analysis?
Hello,
I analyzed a few GEO data sets that were on different microarray platforms using the RankProd R library.
However,... -
Pull mesh assignment from GEO using eutils, how ?
Hi,
I would like to get the mesh assignment for each experiment in GEO. Is there a way to do it through Eutils, or any other way to do it ?
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Extracting probe id's
I have downloaded some CEL files from GEO, and wish to annotate probe id's with AILUN. Can someone advise me about the most time-efficient way of extracting... -
RNA-seq w/ combined mouse+human tissue: public data & methods?
I'm proposing to do some RNA-seq analysis of human cancer tissue transplanted into a mouse (mouse tissue stroma around the tumor), and look at expression... -
GEO as a broker for the SRA
Hello,
We have been told that GEO is a broker for the SRA – that if datasets are submitted to GEO, then GEO will submit the appropriate...
