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sLee1024 · 04-24-2019, 10:19 PM

Hello everyone,

Currently I am trying to identify novel lncRNAs. I just used cuffCompare and generate several files including .tmap file....

farri · 11-09-2015, 06:18 AM

Hi!

I am using the cufflinks – cuffmerge workflow to assemble transcripts for in total 12 libraries. I now want to extract nucleotide...

daikon · 08-14-2014, 04:51 PM

HI everyone,

Many apologies if I'm duplicating, I have searched the forums, google, can't find the specific answer.

So-...

jg3197 · 06-05-2014, 04:47 AM

Hi all,

I am having a problem with duplicate values in my gtf cufflinks input file. I used gffread with the -T option, but looking at my...

Axel · 04-09-2014, 03:27 AM

Hi all,

I am trying to get .fasta files for each CDS in a .gtf file and the most obvious way I can find of doing it is to use gffread and...

xmubingo · 01-06-2014, 06:41 PM

I have read thread 'extract assembled transcripts' http://seqanswers.com/forums/showthread.php?t=5116.

But i am not clear whether gffread...

can I transform .tmap to .gtf/.gff?