Hello everyone,
Currently I am trying to identify novel lncRNAs. I just used cuffCompare and generate several files including .tmap file. After I used several thresholds to filter .tmap file I got a new .tmap file. The next step I wanna do is to extract CDS from reference fasta file according to the filtered gtf file. Is there some way that I can transform the .tmap file I filtered to gtf file?
Currently I am trying to identify novel lncRNAs. I just used cuffCompare and generate several files including .tmap file. After I used several thresholds to filter .tmap file I got a new .tmap file. The next step I wanna do is to extract CDS from reference fasta file according to the filtered gtf file. Is there some way that I can transform the .tmap file I filtered to gtf file?
