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The Application of Whole Genome Sequencing (WGS) in Agricultural Breeding
Whole genome sequencing (WGS) has revolutionized the field of genetic breeding by enabling breeders to identify and select desirable genetic traits in...Last edited by Novogene; 11-01-2024, 10:16 AM. -
Uncovering the Genetic Basis of Rare and Complex Diseases through Whole Genome Sequencing (WGS)
As the cost of sequencing decreases and more efficient sequencing technologies are developed, high-throughput sequencing methods are powerful tools for...
Last edited by Novogene; 08-13-2024, 07:15 AM. -
Post GWAS Interpretation
I’m interpreting GWAS data for a project, from the data I extracted 3 lead SNPs and created LD plots for each using haploview. Now that I have the locations/bp... -
Problems understanding .cov files in Plink
I’m doing a GWAS using plink and I’m trying to write a covariant file. I can't get my head around the format of a covariant file or even how to write... -
Which one is better to use for water stress experiment GWAS or RNASeq?
Hi everyone,
This is my first time in this area of research. I am working on 95 varieties of bambara groundnut. I have done the agromorphological... -
no call in gvcf file of bacteria samples
I used GATK 4 for variant calling in bacteria samples. For some samples and some variants, there is no call. How can I know this no call is because of... -
Course"Introduction to GWAS": Laval University, September 2019
Dear all,
Physalia-courses in collaboration with Laval University (Québec, Canada)... -
Postdoc position and bioinformatician position in cancer genomics
A computational postdoc position and a bioinformatician position are available in my recently established Laboratory of Bioinformatics and Computational... -
PostDoc in Bioinformatics / Biostatistics (Luxembourg)
THIS POSITION IS CLOSED - PLEASE DO NOT SEND FURTHER APPLICATIONS
--------- ORIGINAL POST -----------
We are looking for a bioinformatician...Last edited by bioinfolux; 10-03-2018, 12:10 AM. -
Methods for comparing two GWAS from different phenotypes
I'm trying to see whether there are any established methods for comparing GWAS results from two different phenotypes. I essentially want a statistical... -
Meaning of the P-value relating to SNP (single nucleotide polymorphism)
Hey guys,
im relatively new to the subject and coundnt find a proper answer to my question in the internet yet... :/
I am currently trying... -
Does GWAS best-practise consensus exist?
It seems many people are using Plink and snpTest for GWAS. Is this by tradition or is does a GWAS best-practise exist? -
permutation with plink
Hello.
I'm working on data from illumina.
Now I'm doing permutation using plink with 36 core 60GB memory computers (linux).... -
Limiting variants from WGS to GWAS regions to get more significant cis/trans eQTLs?
Hi,
I have ~60 WGS and RNA-Seq samples which should be sufficient to analyze cis-eQTLs, however not sufficient for the trans-eQTLs. I am... -
Webinar: Variant Analysis in Lasergene Genomics Suite
Join us for a webinar on Wednesday, March 23 at 12:00 pm EDT (GMT -4:00).
Matthew Keyser of DNASTAR will give a live demonstration of...
