Hi all.
After finish assemble fungus genome from pacbio sequel using SMRT link or Falcon assembler, the genome size is twice as much as I...
9 results in 0.0022 seconds.
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Ploidy estimation or decision using pacbio sequel data
Last edited by yjpark1091; 04-22-2018, 11:01 PM. -
Recombination fraction estimation from VCF file
Hi,
Could you please suggest a good tool or script that is able to calculate recombination fraction (for haploid progeny of diploid parent)... -
Can't run GATK HaplotypeCaller set ploidy = 1
Greetings!
I have been attempting to call variants on a haploid genome using GATK HaplotypeCaller, however when I set ploidy = 1, I get... -
Haploid inspiration
Hi all
I'm looking for some inspiration/guidance on processing NGS data from haploid individuals. In a nutshell, we've sequenced at ~ 6X... -
False negative variant calling in haploids. Call variants using coverage (not stats)?
Greetings,
I am looking for the simplest possible way to call variants computationally, just using position coverage and the ratio of reference/alternative...Last edited by Genomics101; 06-05-2012, 10:23 AM. -
Low frequency variant caller for any ploidy level
Hi all,
we've developed a generic, sensitive and fast method (quite a mouthful but it's true, see for yourself
) for prediction of very...
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Should I use chrM,random and haploid fasta file to build hg19?
Dear all,
I have downloaded the hg19 from UCSC and want to combine all the chromosome together to generate the reference genome to be indexd... -
calling SNPs in haploid genomes
Does anyone have any thoughts on calling SNPs from short read data (e.g. Illumina) in haploid genomes? It seems that many SNP calling programs are set... -
high Q ambiguous SNPs from Maq
Hello,
I'm doing mutation detection by ~30x Illumina genome resequencing on a haploid eukaryote.
Maq seems to be working fine...
