Hello Guys,
I have analyzed a set of ChiP-seq data for a Transcription factor. I have my BigWig files and a list of genes names (ncRNA)...
18 results in 0.0029 seconds.
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How do I convert a list of ncRNA genes into annotation using UCSC table browser
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how to represent my ngs results
Hello!
I am a new member of your fantastic society and I am also making my first attempt on next generation sequencing.
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FeatureCounts Normalization
Hi,
I've been using FeatureCounts on differentially accessible regions between multiple atac-seq samples to get the reads per region in... -
shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics
Dear All:
I am pleased to announce the world’s fastest interactive heatmap visualization software, presented as a user-friendly, open-access...Last edited by Bohdan_Khomtchouk; 05-14-2017, 02:50 PM. -
shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics
Dear All:
I am pleased to announce the world’s fastest interactive heatmap visualization software, presented as a user-friendly, open-access... -
Normalising heatmap counts
I'm trying to produce a heatmap for my RNAseq dataset (using RPKM values). The counts vary from 5 - 40 000+. Obviously when I produce the heatmap, using... -
Generating heat map from gene list and fold change between different groups
Dear all,
This is my first post in the forum. I need your assistance for generating heat map. since i have no knowledge of R-language and i have... -
NA entries in cummeRbund heatmap
Hi All,
I'm new to RNA-Seq and Bioinformatics. We have done a RNA-Seq study using Illumina Hi-Seq (paired-end, 90bp reads) on two cell... -
How to visualize microbiome datasets ?
Hi,
I have 16S rRNA datasets produced by Mothur and I want to plot my data and get publictaion quality figures (stacked bars, heatmaps,... -
Gene ordered by ID using getGenes(), package CummeRbund
I want to produce a heat-map using a costumed gene list (accession IDs, e.g AT1G73590). I made a list of genes ordered depending on the processes they... -
Annotating heatmaps
Does anyone have a good tool to annotate a heatmap based on functional group annotations rather than gene name. I am looking to cope with the case where... -
visualization of CNV with genomic coordinates in R ggplot2 or ggbio
Hi all,
I came through a heatmap of CNVs from Illumina Genome Studio which has four samples (see attachment). On Y axis they have genomic... -
Be careful with visualising heatmap.2() output as PDF
Hi folks,
This is just to alert users of a "surprise" we encountered while exploring the PDF output of heatmap.2() in R.
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cummeRbund csHeatmap columns in user-defined order
Hello to all!
This is my first post on RNAseq and let me start by thanking you for existing, I was able to get many answers here
I am... -
Genomic data plotting/visualization
Hi all,
I was going through some gneomic articles and found several similar figures with similar layout/format. Is there any software or...
