Some gene prediction tools such as FragGeneScan use a 6-periodic HMM (di-codon) to represent the coding region.
Why do these tools choose a 6-periodic...
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Why do some gene prediction tools represent the coding region in HMM with 6 states?
Last edited by Mia Blige; 05-09-2021, 08:24 AM. -
ODIN - A Differential Peak Caller for ChIP-seq data
I am happy to announce the tool ODIN, which our lab is using to analyse ChIP-seq data.
ODIN is an HMM-based approach to detect and analyse... -
Compare 10000 sequences in hmmer
So I have used Clustal Omega to do a multiple alignment and hmmbuild to create a hmmer profile for 10000 copies of the same repeat region (30bp long)... -
CEGMA with custom set of proteins
Hi there,
I am trying to use CEGMA with a custom set of alignment that I maintain, instead of the default KOGs. When running in a custom...
