Hello all,
I have obtained HMMER reads on 60 metatranscriptomic sequences, against Pfam, dbCAN2, and MEROPS databases. I ran the protein...
6 results in 0.0024 seconds.
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Parsing HMMER Reads in Biopython
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Filter 18s sequences using HMMs?
Hi all,
Apologies if this has been covered before but I'm fairly new to this and can't seem to find an answer to my question anywhere,... -
Compare 10000 sequences in hmmer
So I have used Clustal Omega to do a multiple alignment and hmmbuild to create a hmmer profile for 10000 copies of the same repeat region (30bp long)... -
Problem running CEGMA
Hi,
I have installed the following as prerequisites for CEGMA version 2.4:
hmmer-3.0
geneid v1.4
genewise... -
HMMSearch on 6-frame translated genome vs protein sequences yields different results
Hi Experts,
I have noticed that when I run hmmsearch of - say a PFAM hmm - on a whole genome that was translated into all 6 possible reading... -
CEGMA with custom set of proteins
Hi there,
I am trying to use CEGMA with a custom set of alignment that I maintain, instead of the default KOGs. When running in a custom...
