Hello!
I'm trying to look for SNPs and indels in a wildcat genome sequenced by our lab, but the problem is that every reference genomes...
6 results in 0.0022 seconds.
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looking for variants only in autosomal chromosomes
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Papers Describing Indel Calling Algorithms
Does anyone happen to know where I could find detailed information on the algorithms used to call indels and assign confidence for the following programs:... -
Validating Predictions of small insertions / deletions
Hi,
I have vcf files with indels which I created using GATK's Unified Genotyper.Is there any tool to vaildate those predictions?
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understanding pindel output
Hi everybody,
I really tried to understand the different files I get when running pindel with the following command:
...Code:pindel -f Mus_musculus.NCBIM37.66.dna.fa
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Indel detection in high coverage amplicons sequenced by MiSeq
Hello everybody,
I have started working with MiSeq and I am trying to sequence custom amplicons with 500 cycles kit (250 nucleotides sequenced by...Last edited by lpalacios; 11-23-2012, 12:25 AM. -
Indel analysis (SAMtools:pileup or mpileup)
Hi! I am doing indel analysis, using SAMtools/bcftools. First I tried to use mpileup with the command line:
samtools mpileup file.fa file.bam...
