26 results in 0.0022 seconds.
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Alignment of ONT data in a Java program through processBuilder
I have a Java-based program for alignment and variant calling. So far we have been using only illumina reads and relied on Bowtie2, which generated great... -
bbduk memory error
Hello everyone,
I've installed bbmap throw 'sudo apt-get install bbmap' and also by downloading the package, untaring it and adding the... -
Calling BBMerge from Java program
Hi,
I have a handful of metatranscriptome sequences that I would like to merge using BBMerge, and I've sorted them together into bidimensional... -
Java Server Application
How does a Java Server Application Communicate with a cloud? -
Running qualimap fails:
I tried to run qualimap: http://qualimap.bioinfo.cipf.es/.
When using the command ./qualimap, I am always getting the following error message:... -
BBDuk java error when filtering using entropy?
Hello,
I am having an issue with a java error when trying to use BBDuk to remove low entropy sequences from a fastq file. The libraries... -
Trimmomatic not working correctly
Hello all,
I am very new to trimmomatic and running into problems. My command line is:
C:\Users\Munster>java -jar "c:\Program... -
Senior Statistical Geneticist, University of Chicago
Senior Statistical Geneticist
We're looking for an analytical thinker with a technical background working in human genetics or genomics... -
How to access SNPedia in Java
I'm accessing diferent databases to collect data for different variants found in a human sequence. One of the databases that I want to use is SNPedia.... -
Access population diversity in dbSNP
I want to access dbSNP database with java and obtain the population diversity. The first thing that I did was to use eUtils (Entrez Programming Utilities)... -
Using library htsjdk vcf files
I want to analyse VCF files that have annotations. I used programs like VEP to annotate the file and now I want to see and manipulate these annotations... -
Java library to manipulate VCF files
I'm starting to work with VCF files and other types of files with genes annotation.
I want to know if there is any Java libraries that I can use... -
fastqc Exception (error)
Hi,
I am running the fastqc (v0.11.4) on Ubuntu 14.04.3 LTS.
I have four fastq files (two pairs of paired-end reads samples). They... -
Combining fasta file and bed file into a different file using biopython,python
hi, I want to create a file using biopython or python or java .for each bed file range, the particular ATGC sequence need to be retrieved and all the... -
error generating database in snpEFF
hi all,
I am trying to use snpEff (http://snpeff.sourceforge.net/).
when i try to build my genomedatabse, I keep...
