I have received a project and could use some advice.
My task is to find sequence matches in mRNA databases across 20+ taxa. I was presented...
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Finding transcriptome matches for thousands of 21-mers
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kmc2 explanation
I'm a computer scientist, so assume I have zero biology knowledge other than what a nucleobase is. I'm currently studying kmc2 (k-mer counting 2). The... -
Evaluate coverage of specific motifs
Is there a method out there that would allow me to determine whether a particular sequence motif (DNA) has adequate sequencing depth of coverage across... -
Velvet lengyh k-mers
Hi at all,
i have a question, i'm using velvet for de nove assembly. Why when i put length k-mers= 22, 24, 26,28, 30, I have this message = velvet... -
K-mers
Hey all,
I am an undergrad who is just getting into bioinformatics and I am looking to understand a little bit more about NGS and assembly...
