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piemmea started a topic estimation of non synonymous over synonymous (Ka/Ks) SNPs over genome with RNAseq

in RNA Sequencing

03-15-2013, 12:17 PM
estimation of non synonymous over synonymous (Ka/Ks) SNPs over genome with RNAseq

dear all
I performed RNAseq in closely related plant species and was asked to perform a Ka/Ks estimation of the transcriptome. The problem is,...

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rahularjun86 started a topic codeml fix_omega and omega

in Bioinformatics

11-03-2012, 04:52 PM
codeml fix_omega and omega

HI,
I am using codeml in my analysis. The use of "fix_omega and omega" parameters of codeml.ctl file is not clear to me. It would be...

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Darth Ghisus started a topic Nucleotide to amino acid translation + synonymous/non-synonymous count

in Bioinformatics

09-03-2012, 07:11 AM
Nucleotide to amino acid translation + synonymous/non-synonymous count

Hi everybody,

I'm going to perform a SNP calling using SAMtools.
The source data consist of an invertebrate mitochondrial transcriptome...

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