codeml fix_omega and omega - SEQanswers

You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now, and join the discussion

X

rahularjun86

Member

Join Date: Jan 2011

Posts: 58
Share

Post
#1

codeml fix_omega and omega

11-03-2012, 04:52 PM

HI,
I am using codeml in my analysis. The use of "fix_omega and omega" parameters of codeml.ctl file is not clear to me. It would be great if someone could explain the use of these parameters.
Best regards,
Rahul

Rahul Sharma,
Ph.D
Frankfurt am Main, Germany
Tags: codeml, dn/ds, ka/ks, paml, positive selection

Previous template Next

Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t

by SEQadmin2

Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...
- Channel: Articles
10-14-2026, 09:55 AM
New Genomics Technologies Take Aim at Long-Standing Limits

by SEQadmin2

Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
- Channel: Articles
09-28-2026, 10:25 AM

	Topics		Statistics	Last Post
	Mayo Clinic-Led Study Detects DNA Mutations Across Noncancerous Tissues by SEQadmin2 Started by SEQadmin2, 10-15-2026, 10:52 AM		0 responses 23 views 0 reactions	Last Post by SEQadmin2 10-15-2026, 10:52 AM
	Study Finds Chromatin Motion Holds Steady Until Cells Face Stress by SEQadmin2 Started by SEQadmin2, 10-14-2026, 05:39 AM		0 responses 27 views 0 reactions	Last Post by SEQadmin2 10-14-2026, 05:39 AM
	Larger Datasets Reveal Additional Switches That Control Gene Expression by SEQadmin2 Started by SEQadmin2, 10-13-2026, 09:56 AM		0 responses 22 views 0 reactions	Last Post by SEQadmin2 10-13-2026, 09:56 AM
	Computational Tool Captures How Chromatin Folds at Scale by SEQadmin2 Started by SEQadmin2, 10-09-2026, 11:14 AM		0 responses 28 views 0 reactions	Last Post by SEQadmin2 10-09-2026, 11:14 AM

Working...