12 results in 0.0021 seconds.
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Liftover dog canFam3 to human hg19
Hi my question is relatively simple. I've converted dog coordinates to human using UCSC LiftOver. These are 200bp intergenic regions that are differentially... -
LiftOver h19 to canFam3
Hi all,
I am trying to convert hg19 coordinates to canFam3 coordinates ( in *.bed format obviously) but liftOver does not seem to work... -
Liftover bam from custom amplicon to hg19
Hi,
I have been aligning sequences to a small subset of hg19 as the project is a custom amplicon.
Is there any tool for converting... -
running Grch37 to grch38 liftover tool locally
Hi all,
I am trying to run the UCSC ligtover tool on my local machine (linux version), but am running into some difficulties.
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hg19/hg19 liftover
greetings all!
I am having some issues getting annotations for my sequences.
As it stands I have 14 BACs and fosmids as .bam and... -
SGD liftOver chain files issue
SGD (Saccharomyces Genome Database), contains a repository of liftOver chain files that allow to convert form any version of the reference genome to the... -
Converting an early genome assembly to current coordinates?
Hi there,
I have been involved in a project where I have aligned my sequence data to MGSCv3, the first build of the mouse genome, which... -
How to convert to or get 1000 Genomes phase1 data mapped to hg18.
Hello.
I'm trying to annotate my variant data with 1000 genomes phase1 data.
(ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf)... -
hg19 to Broad b37 coordinate conversion
Hi,
We'd like to convert hg19 coordinates to Broad's b37 reference coordinates. For example UCSC's "Known Genes" annotations can only... -
Liftover on Mouse dbsnp
I find the latest version of dbsnp for mouse from the UCSC database is based on the mm9 reference. I'm trying to do a liftover of this file to the reference... -
LiftOver coordinate conversion question
Hi,
I'm trying to use UCSC's "LiftOver" tool to convert human genome coordinates from build 36 to build 37. Some positions and... -
Wig liftover and conversion
Hi,
I am just wondering if there is a way to liftover wig files? Or alternatively, is it possible to convert wig files to bed so that I...Last edited by rlh60; 07-30-2010, 04:27 AM.
