Hi,
My RNA-seq data has transcript fusions and novel splice-junctions. So, I am trying to use segemehl in local alignment (-S) mode to...
5 results in 0.0024 seconds.
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Segemehl -Z option doesnt work with split read mapping
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bowtie2 local alignment
Hi,
What are the disadvantage of local alignment mode in bowtie2?
We have a data set with very high quality reads. But when running... -
Techniques for estimating local alignment score distribution parameters
To score a sequence alignment, the distribution of local alignment scores involving random sequences is used as a statistical reference.
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Bowtie2 limit local alignment to 5' end
Hi all,
I'm using bowtie2 to do the local alignment. However, we are thinking the 5' end will have enough good sequencing quality, while... -
Local alignment of two-base encoded DNA sequence.
Local alignment of two-base encoded DNA sequence.
BMC Bioinformatics. 2009 Jun 9;10:175.
Authors: Homer N, Merriman...
