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hlicht started a topic Mapping RNAseq data to genome from related organism

in RNA Sequencing

04-23-2014, 12:37 AM
Mapping RNAseq data to genome from related organism

Hi,

I have RNAseq data sequenced with paired-end 100bp illumina from a fungus with no reference genome. However, we have sequenced the...

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ellenell started a topic BWA MEM mapping to divergent reference

in Bioinformatics

01-06-2014, 09:26 AM
BWA MEM mapping to divergent reference

Hi,
I would like to use BWA MEM to map reads from a species without a reference genome to the closest available reference (about 3-4% diverged)....

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