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How are mate pairs formed and stored
Lets say I have a genome G=ACTTAGGCTA. So mate pairs as far as I know are two reads in the genome which are separated by a known distance. Consider read...
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Adapter Trimming Illumina Mate Pairs (Nextera Protocol)
I have just received our first Illumina mate pair libraries constructed using the Nextera protocol. Unlike prior Illumina libraries these now contain...
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dwgsim illumina mate pairs
Hi there,
I want to simulate Illumina mate pairs and thought of using dwgsim.
However, the manual states that it will create mate...
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Why HTseq warning of unfound mate pairs?
Dear all
I am using htseq-count tool to summarize gene counts from bam files generated by tophat (v 2.03) based on bowtie2. I've used this pipeline...