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Interpretation of mircat results in UEA sRNA workbench.
I am dealing with computational analysis of micro RNAs in tea. For the identification of novel and mature miRNAs i am using uea sRNA workbench (more specifically...
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miRNA annotation from miRBase 21
Dear all,
I just checked miRBase 21 has released and try to look their annotation .gff for quantification. I noticed, in gff has more counts...
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illuminaclip
i am completely newbie to NGS data analysis. i just took an adapter fie and some reads to practice and play around options regarding illuminaclip and...
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MIREAP - optimizing options for different species?
Hello all,
I'm trying to discover novel miRNAs in avian species and I was wondering if anyone has any experience with using MIREAP and...
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TCGA cancer data, and bioinformatics design questions for SNP/ mirna analysis
I'm looking for some help either developing a pipeline or using the proper tools and the correct data sets for the below (see goal).
My...
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miRNA identification in plants using smallRNA deep SEQ data
I am trying to identify miRNAs (novel and conserved) in a plant species using small RNA deep sequencing and a draft genome (~8x coverage). The only problem...