Ciao,
I'm a Bioinformatics newbie encountering an issue with STAR alignment. I downloaded the mm10 genome and indexed it with Bowtie 2. When...
5 results in 0.0043 seconds.
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Indexing -bowtie2, aligning - STAR and FATAL ERROR
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GRCm38 and mm10 reference genomes, Which one to use?
Hy everybody!
I have received the fastq files of some Bisulfite sequencing samples. For the sequencing they have used "gem3.mmusculus.GRCm38_BS"... -
Tophat-Cufflinks-Cuffdiff: different libraries used as replicates
Hi all,
I was wondering whether you can offer me some advice. I have 2 sets of RNA-seq libraries (plus and minus conditions per set -... -
gene tracking in cummeRbund
Hello,
I am having difficulty with the makeGeneRegionTrack command in cummeRbund. Below is what happens, after rebuilding the cuffData.db... -
Liftover on Mouse dbsnp
I find the latest version of dbsnp for mouse from the UCSC database is based on the mm9 reference. I'm trying to do a liftover of this file to the reference...
