I would like to ask about known literature about multiple reads of ChIP-Seq analysis.
Commonly researchers use "uniqely" mapped...
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Multi-Reads in ChIP-Seq Experiment
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Samtools: extract multiple cromosomes/scaffolds from bam file
Hi,
I want to create a bam file containing three or four chromosomes/scaffolds.
I only know this command
samtools view -b...Last edited by Anti; 01-12-2015, 03:10 AM.
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cannot away with cuffdiff,incredible
Hi,all
I have 4(A,B,C,D) sample in 4 times(increasing time),I got diff result in 3 different cuffdiff
1.cuffdiff 3(A,B,C) individual...Last edited by upper; 05-22-2013, 06:28 PM.
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Aligner that reports all alignments?
Hi, I'm looking for an aligner that reports multiple/all hits rather than just a single one. I know mrfast or BWA-short can do this for Illumina data,...
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Tools for estimation of indels and refinement for multiple sequence alignments
Hi guys,
I have a multiple sequence alignment performed by MUSCLE program in fasta format.
I would like to use some tool to refine...
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align two or more transcriptomes
Hi,
Im interested in finding differentially expressed genes and have come to a point where im looking for advice. Basically some of the 'most differentially...