Hi,
From what I understand, for smart-seq2 sequencing files there are multiple fastq files per sample with one single/pair per cell. However,...
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Downloading smart-seq2 fastq files from NCBI GEO
Last edited by malonzm1; 05-08-2023, 07:42 PM. -
Bioinformatics Outreach and Education Specialist, NCBI
We are seeking a creative and detail-oriented professional with exceptional communication and teaching skills to provide educational and technical support... -
Determining quality of genome assembly
Hi! I apologize for this really basic question, as I am new to the field.
I am looking for homologous genes in various species using BLAST.... -
Choice of submitting DNA sequences to GenBank versus ENA Sequence
BACKGROUND:
As most of you are aware, three large, international sequence repositories accept submissions of DNA sequence data: DDBJ [1], ENA Sequence... -
NCBI SRA & TSA submission tutorial
We have just published a very detailed guide to submitting RNA-Seq reads to NCBI's SRA, and transcriptome assemblies to TSA. We have often felt the need... -
Survey: help define Gencode and NCBI primary transcripts
Cross-posting this here since it will be of interest. Likely to remain open for 1 week.
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...Last edited by GenoMax; 04-10-2018, 05:38 AM. -
Uniprot IDs for a whole genome
Hallo,
I have extracted a population bin from a metagenome. I have also uploaded the same to the genebank. But according to their rule... -
EBI Metagenomics: How to analyze NCBI data?
Uploaded and public data from NCBI-SRA is mirrored and accessible at ENA (European Nucleotide Archive).
EBI Metagenomics is a pipeline that analyzes... -
Data processing in ncbi
Hello
I’ve downloaded a raw data from GEO database from NCBI, you know NCBI has a section named "Data processing" in which explained... -
Question regarding uploading genome to GenBank using tbl2asn
Hi everyone,
I am preparing a de novo assembled genome to upload into Genbank. I have followed the instructions in the website as indicated... -
ORF Finder (NCBI) Query Regarding Introns. Please Help
Hi there,
My query is: do I need to remove introns from my sequence before or after I input it into ORF finder?
- I assumed... -
biosystems_gene file from NCBI biosystems
What are the columns in NCBI biosystem's biosystems_gene file?
I get this file "biosystems_gene" from
ftp:/... -
NCBI is phasing out sequence GI identifiers in September 2016
Cross-posting this announcement from NCBI as it will be of wide interest/impact (@Anima Mundi posted the original over at BioStars). NCBI is recommending... -
How to have a library of nucleic acid sequences without going on NCBI
How to have a library of nucleic acid sequences without going on NCBI every time ? -
plant genomes at NCBI
Dear all,
There are genome sequences for various plants at ftp://ftp.ncbi.nlm.nih.gov/genomes/PLANTS/ which are of interest to me. However I cannot...
