Hello Guys,
I have analyzed a set of ChiP-seq data for a Transcription factor. I have my BigWig files and a list of genes names (ncRNA)...
12 results in 0.0028 seconds.
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How do I convert a list of ncRNA genes into annotation using UCSC table browser
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Annotation of ncRNAs from RNA-Seq data
Dear all,
I'm working with RNA-Seq data and I would like to annotate the small and long non-coding RNAs present in my samples (in two separate... -
What happened to rfam genomes?
On the rfam website it says:
http://rfam.xfam.org/help#tabview=tab5
"Before trying to annotate your own genome sequences on... -
Searching for non-coding RNAs
Hi
I am trying to find non-coding RNAs from WGS
I have attempted to use the ncRNAscout tool but I keep geeting an "out_of_range"... -
Orthologous non-coding genes
Dear all,
I am doing an RNA-seq project, whose aim is to look for lncRNAs of different species. Once I have a set genes that give lncRNAs... -
bowite query about miRNA-seq
Hello all,
I have aligned miRNA short reads by bowtie with -n 1 -l 18 and was expected mapped output with not less than 18 nt as i have restricted...Last edited by unique379; 12-10-2013, 04:16 AM. -
ncRNA from RNAseq...
Dear all,
I have an experiment where I test three different conditions (you know, usual stuff
). Total RNA was extracted and sequenced...
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Rfam for bacteria
Hi
Any one suggest me how to identify ncRNAs for bacteria (Deep sequencing data).
I want to identify ncRNAs in Bacteria....Last edited by Krish_143; 07-18-2012, 05:25 AM. -
long ncRNA from RNA-seq
I am a biologist and a poor programmer. I have assembled RNA-seq data from which I'd like to extract all potential long ncRNA candidates. I assume the...Last edited by stephenhart; 09-28-2011, 11:45 PM. -
Tophat for finding long ncRNA with short reads?
Hi,
has anyone used Tophat to look at long non coding RNAs or mRNA like ncRNAs using NGS?
I am assuming of course that things would...
