Hi,
After running velveth. velvetg and oases on the SRP file, the trasncripts file generated is empty.
In previous steps,...
11 results in 0.0027 seconds.
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Velvet+Oases Generating empty transcripts and contigs file
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Obtaining contig stats from Velvet+Oases
Hey all,
Here's a laydown of my information.
We sequenced a transcriptome. The company returned to us 4 different reads of that... -
Oases python script can't find Velvet
Aloha,
So, I'm trying to run Oases to create a de novo transcriptome. I have the paired-end reads file ready to go, and the newest versions... -
Velvet/Oases short1_nb?
Both Velvet and Oases stats.txt files include a final column called short1_nb. I'm getting numbers here, but can't find any explanation for them All example... -
New hardware for Oases: how much memory?
Hi,
I'm working on RNA-Seq data from Illumina GA. It's 60M reads. I tried with a machine with 46G but it wasn't enough (Linux OOM killer... -
assemble RNAseq data with Oases but so many transcripts in locus_1
Hello everyone
I'm doing transcriptome assembly work with Oases.
The illumina data's read length is 100nt and its quality is pretty... -
Error when running Oases for transcriptome assembly
Hi there,
I was using oases to do the transcriptome assembly for our RNAseq data but the computation job got terminated by an error after...Last edited by yjx1217; 06-18-2012, 12:14 PM. -
Problems with transcriptome assembler Oases
Friends,
I am trying to run Oases for transcriptome assembly. The result is far from expected, so I would like to ask whether I am running... -
n50 value for transcriptome assembly
Hi,
I am doing a Denovo transcriptome assembly using oases. I would like to know about the relation between n50 value obtained from velvet...Last edited by Ramprasad; 10-17-2011, 06:27 AM. -
Velvet OpenMP cluster setup
Hi,
We are investigating issuing large assembly jobs into our compute cluster which uses Sun Grid Engine as the batch scheduler. Is anyone... -
Velvet/Oases transcript expression level?
Hi,
I am in the process of de novo transcriptome assembly from a non-model eukaryote. I have 17 million 65 bp, paired-end reads that I have...
