Hello,
I have the assembled transcriptomes from 15 different (more or less closely related) species. I would like to pull out all the (presumeably...
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How to get conservation of vaccine candidates between hundreds of bacterial strains?
Hi community,
We have identified vaccine candidates via an ex-vivo RNA-seq approach. Next step would be to perform conservation of these...
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Clustering sequences based on sequence similarity
I have 8000 protein sequences that I want to cluster based on similarity (not identity) and select the longest representative sequence from each cluster....
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Relating OrthoMCL clusters with Phylogenetics
I need to relate the OrthoMCL clusters (that I derived from comparison of several insect proteomes) with phylogenetic tree but I am not able to understand...
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progressiveMauve Orthologs Output
I'm aligning 9 prokaryotic genomes, 7 of which are annotated and two are not. In the manual, on the bottom of the Mauve Output File Formats page, it...
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Comparing mouse and human differentially expressed genes
Hello,
I have run differential expression analyses for mouse and human using RNA-seq data. I now have a list of genes (Ensembl IDs) differentially...