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PAML Error
I am running the aaml program of PAML using a amino acid alignment of several species. When I run the aaml.ctl file with my tree and phylip file, I receive...
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Site-wise Log-Likelihood
Hello,
I have several thousand sets of CDS from more 20 species. I would like to determine the Site-wise Log-Likelihood support for all...
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codeml fix_omega and omega
HI,
I am using codeml in my analysis. The use of "fix_omega and omega" parameters of codeml.ctl file is not clear to me. It would be...
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Looking for positive selection pipeline suggestions
I need to set up some large scale assessments of lots of predicted transcripts from transcriptome assemblies for tests of positive selection. Does anyone...