Hi,
I am attempting to use SSPACE version 3 to re-scaffold some mRNA contigs using paired-end RNA-Seq data. While SSPACe was designed for rescaffolding...
8 results in 0.0030 seconds.
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Problem with SSPACE, multi-threading and memory restrictions
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Running Blast+ on multiple nodes on a cluster -- what is the best way to that?
Hi, I have been recently granted access to the HPC cluster of my university. I am going to run several blastx searches (Blast+ version, not legacy blast)... -
genometools parallel
Hi, I am using genometools and find it quite slow with an 1G fasta file.
When running:
$ gt suffixerator ...
It simply used one cpu... -
Help with parallel transcriptome assembly.
Hello,
I am trying to assemble an insect (a leafhopper) transcriptome. The raw data is 372,756,990 reads, 150 bp in length. Previously,... -
GATK Queue not running jobs in parallel
Hi all, I've just started experimenting with using GATK-Queue to run through a GATK pipeline with some scatter/gather parallelism. I'm none too familiar...Last edited by Rocketknight; 03-01-2012, 09:34 AM. -
tophat running parallel
Hello,
I'm running tophat with -p 4 to run on four cores simultaneously.
It seems that bowtie runs on 4 cores indeed, but the whole... -
question about parallel environment
Dear all
Hi,
I'm using BWA in the parallel environment.
Now, I have tested two pattern fastq files... -
Newbler Error: no progress
Hi
The Newbler program (gsAssembler) reports me the following error messages when run via the GUI:
Error myProject: Process appears...
