I need to run Hisat2 on 36 paired-end files. The files are labelled like:
file1_1.fq
file1_2.fq
file2_1.fq
file2_2.fq
...
6 results in 0.0029 seconds.
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Parallelising Hisat2
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DEXSeq parallelization error
Hi everyone!
I have been attempting to parallelize DEXseq on our SGE cluster using the biocparallel
method described in the latest... -
Parallelization for Bismark using Bowtie 1
For Bowtie 1, I can use the -p option to do parallel search, but when I run Bismark with Bowtie 1 and the option -p 7, output is
"The... -
number of cores in DEXSeq using parallel library
I am using DEXSeq and one of the steps is to estimateDispersions. It offers the parallel computing functionality via the parallel R package. In particular,...Last edited by alittleboy; 06-26-2013, 06:52 PM. -
Bioinformatics Programmer for Metagenomics Center - University of Oregon
The University of Oregon is looking for a bioinformatics programmer for their new metagenomics center. Details here: http://jobs.uoregon.edu/uncla... -
Extreme parallelization for NGS analysis
I'd like to start an open discussion on the topic of parallelization for NGS data. I noticed that Galaxy recently came out with a cloud-based interface...
