Hi all,
I have expression values in TPM and FPKM from RSEM. Is it correct to perform a PCA direclty on these values or I have to manipulate these...
7 results in 0.0023 seconds.
-
CummeRbund - PCA
Hello,
I'm using the PCA plot function implemented in the CummeRbund package. The package is very user-friendly, however, I can't find... -
plink2 to EIGENSOFT .geno conversion
Hi all,
I have used plink2 for my project, and now have a database of .ped, .map, .bim, .fam, etc... files. I am interested in trying a... -
WGCNA eigengene correlation
I'm using the WGCNA package in R to analyse RNA sequencing data. I've hit a point follwing the tutorial, and adapting it to my data, where I don't understand... -
Summarizing PCA in DESeq2
I am interested in knowing the proportion of variance that my components describe in the Principle Component Analysis in DESeq2. I have successfully been... -
cummeRbund PCA plot
Can anyone explain cummeRbund's PCA plot?
I do understand traditional PCA plots, like the one in DESeq, and cummeRbund's MDS plot, but what does... -
edgeR MDS plot: any way to get genes contributing to axes out?
Hi All,
I'm working with edgeR and have a MDS plot that is interesting but want to know which genes contribute to the two axes. Any suggestions...
