Hello,
So, I've got a task to predict pairs of TF-target gene via binding site. After done some research, I've got a general idea and I...
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TFBS prediction algorithms
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Identify Translated Sequence in Batch
Does anyone have any suggestions on how to identify in batch for isoseq data the start and stop positions for predicted gene sequence?
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Error in MIREAP
Hello.
I'm trying to run MIREAP to predict novel miRNAs in my dataset.
However, when I run the script, the following message appears:...
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Prokaryotic Genome Prediction tool (Complete genome)
Dear all,
I have a single contig (complete and circular, validated using dotplot) bacterial genome generated from PacBio RSII sequencer,...
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Predicting promoter sites from NGS experiments
Hi,
is it possible to predict promoter sites from NGS experiments? Given a set of RNAseq experiments (human, triplicates) of several biological...
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Determining the Y haplogroup using SNPs
Hello,
I would like determine the Y haplogroup of an individual but I have no experience in doing so. I have WGS data on the individual...
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Augustus training questions
Hi, I have a few questions about training Augustus:
1) is etraining something new that supercedes autoAug?
2) Are the training genes...