Dear all,
I hope you are doing well.
Firstly, I am sorry if my question looks naive, I am beginner in this field.
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14 results in 0.0023 seconds.
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Importing data from GEO to R for analysing
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UpSet R plot, input data format wrong?
Hi!
I processed 3 BAM files that were generated from 3 different pipelines, so in total 9 BAM files by writing scripts in bash and python.... -
CummeRbund: Warnings, not averaging correct samples together
Hi, I'm reanalyzing some data from a few years ago. When I put it back into readCufflinks() I get the following warnings after some other problem solving:... -
KEGG with pathview using CuffDiff data
Hey everybody,
I am a newbie in coding in Bioinformatic and I have a question.
Using a HPC I perform a quality control and... -
CummeRbund, extracting only one chromosome
So I'm new to R and want to create a scatterplot with cummeRbund that has only chr8 plots.
>pdf(file="practice_8.pdf")
...Last edited by ajsn6c; 06-21-2016, 04:43 PM. -
Finding mismatches between two sequences using R
Hi,
I am new to R programming. I have two fasta files namely WT and MT that contains 3 protein sequences which is given below
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Finding the Similarity/dissimilarity of RNAseq samples using correlation
Hi,
I am working on RNAseq data for 8 samples which biological duplicates. I want to find how close the samples are with respect to each... -
Comparing Transcriptomes and finding common transcript IDs
Hi,
I have two transcriptomes, Transcriptome_old and Transcriptome_new both generated using de novo approach at different time point with... -
Splitting the fasta file into 2 columns
Hi,
I have read the fasta file using "read.fasta" from "seqinr" pacakge. The file like like as follows:
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total count filter cutoff in edgeR
I'm using edgeR for analysis of may data and I'm not sure what total count filter value cutoff value I should use, My reads are paired 50bP reads and... -
GO database
Hi,
First of all sorry for lack of information!
I want to do GO analysis on my microarray data. I am going to use PIANO package... -
How to cluster samples with PCA in R?
Hi,
I have RNA-seq data for 16 mouse samples. I would like to cluster cufflinks results of these samples by PCA in R. The data looks like... -
CummeRbund problem in R with segfault
Hello guys, I am new to R an using it in Mac OSx which I started handling 4 months back. I am using cummeRbund to visualize my data outputs of the cuffdiff... -
how to change value of color key in heatmap.2() in r ?
I used the function heatmap.2() in library . how can I change 'Value' in the color coded bar to any other name?
Many thanks :-)
