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  • Importing data from GEO to R for analysing

    Dear all,

    I hope you are doing well.

    Firstly, I am sorry if my question looks naive, I am beginner in this field.

    For importing data from GEO websit for RNA-seq, I use GEOquery library in R. Problem here is, some data are complete regarding RNA-seq data and meta data, but most of the data are defect without data which look weird for me.

    For example: GSE149614, there is publication that authors used this data for their investigation. I used it for analyzing in R and importing it with GEOquery but there is no data after importing. I think maybe I am doing something wrong.

    Can somebody help me with it?

    bests,

  • #2
    Something like this:

    Click image for larger version

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    • #3
      Hello ruhi.vsg. I'm not familiar with this, but I'm going to include your question in our newsletter so that others will see it and hopefully be able to help.

      Comment

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