Hey, I am running picard to remove pcr-duplicates using MarkDuplicates.jar
on bam file porduce by tophat(with fusion-serach on), and I encount:...
4 results in 0.0030 seconds.
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Possible picard bug
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Removing Duplicate Reads from Torrent data
Does anyone have any experience with removing duplicate reads from Ion Torrent data? Any idea if the 454-designed programs work well with Torrent (e.g.,...Last edited by vpp605; 06-10-2013, 06:52 AM. -
Error during PicardMarkDuplicates (Illumina paired-ends mapped by Bfast)
I mapped one run of Illumina paired end reads by using Bfast (bwaaln + localalign + postprocess), then converted it to bam, performed the Picard AddOrReplaceReadGroups... -
Samtools's rmdup vs. Picard's MarkDuplicates
I am trying to remove duplicate using samtools's rmdup and rmdupse, they don't seem to just remove everything that share the same start/end sites. I...
