Hi all,
I am using ripSeek function from RIPSeeker package (on a RIP-seq data set), the following way:
seekOut <- ripSeek(bamPath=mybamfiles,...
8 results in 0.0021 seconds.
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RIPSeeker "Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : .
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Best library prep kit for RIP-Seq
We are preparing to do RNA-IP (RIP)-seq. For library capture in our system, we will need to do ribosomal depletion (rather than mRNA enrichment). Our... -
RIP-seq library prep - single or paired-end reads?
Hi all,
I'm going to be helping a colleague with analyzing some RIP-seq data. We just had a question regarding the library prep protocol. Specifically,... -
ngs.plot error: The combination of genome and region does not exist
Hi,
I have aligned my RNA-immunoprecipitation-seq (RIP-seq) data to the zebrafish Zv9 genome. I am trying to obtain a plot showing coverage... -
What control to use in RIP-seq?
I've seen people use IgG pull down, RIP-input or RNA-seq as controls in RIP-seq analysis. What is the difference between them? Thanks. -
RIP-Seq data analysis -- unsure which #'s to compare!
Hello SEQAnswers -- I'm hoping you can provide some insight.
We recently performed a RIP-seq experiment in our lab and I'm a bit unsure... -
Rip-seq
Hi all,
I am an italian PhD student. I am interested to learn how analyze data from Ngs and in particular from RIP-Seq. at moment my studies have... -
More information on RIP-seq
Hi everyone,
I am a freshman,Could you give me more information on RIP-seq, I want to do some research about the regulation of genomic on...
