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Counting codons in RNA-seq data
I performed an experiment with a large RNA-seq dataset and I added mRNA stability assay to it. I want to analyze the factors that impact mRNA stability...
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Course: Summer courses @ Edinburgh Genomics
We have more great courses running at Edinburgh Genomics this summer. All taught by experienced bioinformatics tutors, these courses will help you progress...
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DESeq2: model design in rna seq - person variability
I have 8 samples that correspond to 4 persons measured in two times, 0h and 20h.
names_chip person time Dample
1 IonCode_0109 ...
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Recommended read depth for low input bulk rna-seq
Hi,
I'm wandering what is the sequencing depth recommended for low inupt bulk RNAseq, let's say 1000 cells.
I found on the Immgen website...
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Advice RNA-Seq experimental design
Hello,
I've recently started working in a group that would like to start doing RNA-Seq experiments in order to compare the transcriptomes...
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Advice RNA-Seq experimental design
Hello,
I've recently started working in a group that would like to start doing RNA-Seq experiments in order to compare the transcriptomes...
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Normalisation of RNAseq data from UCSC Xena Browser
Dear all
I am very new to this so apologies in advance..
I am trying to teach myself the basics of R and bioinformatics...
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how to normalize reads in metatranscriptomes?
[Note: I posted this question on Biostars as well https://www.biostars.org/p/295807/]
I am wondering if anyone here is familiar with this...
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Typical costs for RNA-Seq analysis
This is kind of the wrong place to post this question given that we are all analysts who do the work (mostly at universities) rather than sending it out....Last edited by [email protected]; 05-04-2017, 09:14 AM.
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Tool to find splice variants
Hi,
I have several experimental groups with more than one samples each.
I want to find out (for a group of genes) which...
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Help with TOPHAT on genepattern
Hello everyone!
I am new to bioinformatics. With a strong background in molecular biology and biochemistry, I am looking to transition...