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  • sr85
    Junior Member
    • Oct 2021
    • 1
    #1

    Counting codons in RNA-seq data

    I performed an experiment with a large RNA-seq dataset and I added mRNA stability assay to it. I want to analyze the factors that impact mRNA stability in my assay, and I was wondering if I can analyze codon usage/bias in RNA-seq data without performing Ribo-seq. Is there a script or software that can count and quantify codons in RNA-seq datasets? Any help would be really great.
    Thanks!
    Tags: bioinformactics, codon usage, rna-seq advice, rna-seq analysis
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