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lmilne started a topic sff file size limit in Newbler?

in Bioinformatics

10-20-2009, 12:57 AM
sff file size limit in Newbler?

I have tried using runAssembly on the sff files I received from the sequencing guys, but for one file I get an error message:

$ runAssembly...

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DNAjunk started a topic 454 runAssembly contig lengths

in 454 Pyrosequencing

08-20-2009, 07:49 AM
454 runAssembly contig lengths

Hi

I've made assemblies of several 454 reads (in sff and fasta format) by using two different programs: runAssembly (reads in sff format)...

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wiart started a topic Newbler de novo assembly and repeats

in De novo discovery

07-24-2009, 11:32 AM
Newbler de novo assembly and repeats

Hi,

I'm using Newbler de novo assembler from the command line (runAssembly), with a set of 18,000 reads.
I'd like to tweak the "repeat"...

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Last edited by wiart; 07-24-2009, 11:33 AM. Reason: added information

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