Hi,
I use bwa to align sequence data (Paired End Data from Ilumina).
I used bwa 0.6.2 but get stucked.
Here is...
12 results in 0.0022 seconds.
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bwa 0.6.2 -sampe command does not work.
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BWA sampe malformed @RG line
Coming into work today code that was working all last week now is giving problems. I have fastq files, i align them using bwa aln then create sam files... -
Merge multiple *.sai files in bwa ?
I have illumina paired-end multiple-lane_reads of same individual which are distributed in 3 lanes like below;
C09FNACXX_EGLOB-140092_GTCAGT_L008_R1_001.fastq...Last edited by hosseinv; 09-09-2012, 10:38 PM. -
Problem running BWA sampe
Maybe someone can see what I'm doing wrong here. I'm using BWA to align a dataset and get a SAM file that I can use for variant calling. I've indexed... -
BWA sampe problem
Hi,
Having trouble figuring out what I have done wrong to make BWA sampe give me a mess instead of a functional SAM file. The raw data... -
Does bwa support SOLiD PE data?
Hi,
I have used 'bwa aln' and 'bwa sampe' for mapping Exome captured SOLiD PE reads.
I am getting very low PE mapping % (29-35%) One of... -
bwa sampe bam input
I have paired-end data in two separate fastq files. I started out with converting and merging the two fastq files into a single unaligned bam using picard... -
BWA sampe multiple hits question
Using sampe n=10 and N=0, I get the following results.
seq#0 83 gi|150002608|ref|NC_009614.1| 834297 37 75M = 834220... -
BWA 0.5.7 Gap Inferrence Bug - fix?
When running version 0.5.7 of BWA sampe to generate SAM files from paired end reads, I found that it was generally working fine, but occasionally I would... -
bwa color space error
Hi all,
I'm getting an error using bwa to align solid reads to hg18.
Here are the steps I have completed, and the error
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BWA memory issues
We're trying to use BWA with paired end reads (bwa sampe with default settings) and running into memory problems when aligning to whole human genome.... -
bwa sampe problem
I have been successfully using bwa to align my reads to indexed build36.3 human genome using the "bwa aln" command for 33 lanes of paired and...
