Hi there,
I'm trying to use bwa to align Paired-end reads to mouse genome. The alignment step goes well, but the bwa samse failed and generated...
4 results in 0.0028 seconds.
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XA tag from bwa
Hi everyone,
I am mapping 36bp Illumina reads to a reference genome using BWA. When I convert my SAM output to BAM format with SAMTOOLS... -
Alternative Hits in BWA generated .sam
I am working with Illumina sequences that are about 76 bp long. I have been looking through some .sam files generated by samse after aligning to a reference... -
BWA samse -n option
I am having trouble with the -n option with bwa samse (version 0.5.3). If I either leave it off or use -n -1, I do get apparently good results in SAM...Last edited by kellyv; 01-19-2010, 01:25 PM. Reason: noticed extra information partially answering question
