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dena.dinesh · 12-01-2014, 02:33 AM

HI,

In my RNAseq raw data, I filtered out adapter sequence using fastx and later removed rRNA reads by mapping to rRNA reference file....

Sfunkhouser · 09-18-2014, 11:17 AM

Using samtools mpileup -D, (and bcftools view) I have been able to generate VCF files with the samples having the "DP" format tag. This appears...

k.devito · 07-31-2014, 03:20 AM

Hi there!

I'm still pretty new to bioinformatics and using programs in Terminal (MacOS 10.9) and have been struggling to get samtools indexing...

lre1234 · 07-15-2014, 04:52 AM

Hi all,
I have made some SNP calls using Samtools, following the SNP calling, using the BCFtools, I have been playing around with some different...

skbrimer · 05-30-2014, 12:02 PM

Hello all,

I'm having trouble using samtools to get a consensus of a small viral genome and I'm fairly certian its user error. I am very...

EOF marker is absent in samtools