Hi,
I'm trying to clean a bam file, by deleting reads that failed QC (for instance), and writing a new bam file. When I run the following...
4 results in 0.0024 seconds.
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"samtools: no @sq lines in the header" - metagenome!
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samtools view and mapq
I am working with paired end Illumina resequencing data from multiple populations.
My workflow involves samtools view -q to generate bamfiles... -
Samtools Error Message : no @SQ lines in the header
I have the same issue with samtools no matter how hard I'm trying to grab the header it just doesn't work ..
...Code:samtools view -H file.bam
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samtools quiet mode?
Hi all,
I'm wondering if samtools has a quiet (silent) mode, where all output is suppressed. I couldn't locate such an option. It appears that,...
