Hi
I'm starting to use bfast and I have some doubts about some indexing parameters.
When indexing do I have to do it with the...
8 results in 0.0029 seconds.
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when should I disable seeding in BWA?
Hello, I have previously been using BWA with the seeding disabled (by setting the seed length to be greater than the length of my reads). I originally... -
Alignment of multiple sequences to one (fixed) reference
Hi all,
I have a reference sequence, which is shorter than the sequences I want to align. The first sequence is my reference, so it should be more... -
Mapping bacterial genome with BWA - best seed length and algorithm?
Hi There,
I am mapping bacterial genomes to a reference sequence and am wondering if anyone has experience or knowledge with the best algorithm... -
presentation of Mendeleyes software..
Hi all,
We are pleased to introduce you Mendeleyes Breeding&Trials Platform provider for Consultancy, Software and Last Generation Breeding... -
Bowtie 2 parameters
Hi All,
I am using bowtie 2 to align some illumina sample data on an influenza genome which has less than 14k nt. The samples have more... -
What are the default settings in bwa?
Hello,
If I understand correctly, the default setting of bwa aln - according to the homepage - is no seeding and max 4% mismatches over... -
Megan SEED/KEGG question
Hello.
I'm working with 454 titanium reads for metagenome data.
I've worked with Megan briefly, and it's been great for taxonomic comparison....
