Hi There,
I am mapping bacterial genomes to a reference sequence and am wondering if anyone has experience or knowledge with the best algorithm to use and/or any suggestion about seed length. (I'm new to bioinformatics!) Some of my samples are 95bp paired-end reads, and some are 115bp paired-end reads.
Any suggestions on optimal parameters to use will be greatly appreciated! (Note: I have trimmed the sequences.)
I am mapping bacterial genomes to a reference sequence and am wondering if anyone has experience or knowledge with the best algorithm to use and/or any suggestion about seed length. (I'm new to bioinformatics!) Some of my samples are 95bp paired-end reads, and some are 115bp paired-end reads.
Any suggestions on optimal parameters to use will be greatly appreciated! (Note: I have trimmed the sequences.)
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