Greetings.
I am doing some de novo assembly of a 23 Mb genome using MiSeq paired end Illumina reads (250bp reads, 400bp insert (SD 130))....
3 results in 0.0022 seconds.
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Velvet 1.2.10: why the big difference in results with -long vs -short w/ 250bp reads?
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AMOScmp vs AMOScmp-shortReads vs. AMOScmp-shortReads-alignmentTrimmed
AMOScmp vs AMOScmp-shortReads vs. AMOScmp-shortReads-alignmentTrimmed
When is it appropriate to use each one? The differences seems so... -
unique reads for downstream analysis
I had a general query with short fixed length reads. Though I intend it for Solexa data only, it might be directly applicable to solid as well
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