Hello everyone,
I'm writing this post because I observed a strange behavior with bowtie2. And I suspect this behavior to affect mostly alignments...
11 results in 0.0031 seconds.
-
Bowtie2: a specific use where the parameters are not respected
-
Up-to-date expert knowledge is the key to generating impactful biological insights
Up-to-date expert knowledge is the key to generating impactful biological
insights.
To address this unavoidable... -
read trimming for small RNA NGS data
Hello all. This seems to be a routinely discussed question with many answers around here, however I could not use the answers provided in other questions... -
peak identification with macs2 for small RNA data
Hello,
I have illumina data from small RNAs and am using MACS2 to identify peaks in read mapping. (Read mapping done with bowtie1.) This... -
Hello
Hi, I am in a R&D group in San Diego, CA and we are working on improving small RNA library preparation workflows using modified adapters to suppress... -
Small RNA Read Counts
New to NGS data, currently analyzing small RNA seq data with emphasis on piRNAs, looking to eventually do differential expression analysis. I have my...Last edited by WHP; 04-28-2014, 11:53 AM. -
New Website - ecSeq Bioinformatics
It is a pleasure for me, to announce our new website: http://www.ecseq.com
ecSeq Bioinformatics is a bioinformatics... -
SHRiMP - Which parameters for aligning to miRNAs?
Hi,
I recently read a few reviews that point to SHRiMP as the short read aligner of choice when mapping small RNA-seq reads to a database... -
Normalization of small RNA data for library size
Hi,
I have a few libraries of small RNA reads with different read counts: some libraries have more than 10 million reads, some others have <1... -
Postdoc at Trent University/Canada
Hi there,
ok, a short introduction:
My name is Conny and I'm working as a postdoc at Trent University in Peterborough/Canada.... -
can small rnaseq data be analyzed like rnaseq data?
Sorry if this is a dumb question.
I was wondering whether small rna-seq data can be analyzed with the standard software for rna-seq data...
