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Low read counts from old PacBio data
I've been helping other people with processing PacBio data using the SMRTanalysis software. Basically, for our purposes, I've just been using the reads...Last edited by anjama; 09-20-2016, 08:34 AM. -
Help: de novo assembly using SMRT portal and hgap.3
Problem: Extremely new to assembly and attempting to execute de novo assembly using hgap.3 in SMRT portal using 9 SMRTcells. lambda example data provided... -
file transfer in XSEDE User Portal
Has anyone experience with the XSEDE portal for assembling PacBio reads using the smrtanalysis pipeline? I have found smrtanalysis on a machine called... -
smrtpipe.py, HGAP run - detailed description of reports generated
Hello,
I would like to learn few details about the following reports from HGAP run, generated by smrtpipe.py:
...Last edited by Monika_bioinf; 05-14-2015, 01:36 PM. -
PacBio internal control showing up in polished HGAP assembly
I noticed something odd when running two different HGAP assemblies. In both cases, the polished_assembly.fasta files contained a ~4kb contig with >3000x... -
SMRTanalysis (v.1.4.0) for CentOS - missing a FORTRAN library
Install tarball for the CentOS install of SMRTanalysis on PacBio DevNet was missing (at least until yesterday) a required FORTRAN library (libgfortran.so.3)....Last edited by GenoMax; 03-08-2013, 07:09 AM.
